Hi Blake, I haven't used the autodoc plugin, but from your stack trace (and a quick check of the numpy install on my system) you may be able to resolve this by changing the "import multiarray" statement to "from numpy.core import multiarray".
Hope this helps, Pete Blake Mertz wrote: > Hello, > > I came across a short thread started by James Starlight last month > (December) which was not resolved, and I have been having the same issue. I > upgraded to v1.6 in December, and since then am unable to load the autodock > plugin. When I go to import autodock.py, I get the following error: > > Unable to initialize plugin 'autodock_plugin' > (pmg_tk.startup.autodock_plugin). > parser: matching files: > autodock.py autodock.pyc > PyMOL>import autodock.py > Traceback (most recent call last): > File "/usr/lib/python2.7/dist-packages/pymol/parser.py", line 260, in > parse > exec(layer.com2+"\n",self.pymol_names,self.pymol_names) > File "<string>", line 1, in <module> > File "autodock.py", line 48, in <module> > from numpy import * > File "/usr/share/pyshared/numpy/__init__.py", line 137, in <module> > import add_newdocs > File "/usr/share/pyshared/numpy/add_newdocs.py", line 9, in <module> > from numpy.lib import add_newdoc > File "/usr/share/pyshared/numpy/lib/__init__.py", line 4, in <module> > from type_check import * > File "/usr/share/pyshared/numpy/lib/type_check.py", line 8, in <module> > import numpy.core.numeric as _nx > File "/usr/share/pyshared/numpy/core/__init__.py", line 5, in <module> > import multiarray > ImportError: No module named multiarray > > After searching online, it sounds to me like this is a combination issue -- > often with Debian users (which is what I am using) there are issues > importing numpy. But when I execute python from the shell and import numpy, > I get no errors: > > blake@NEI-GPU:/tmp$ python > Python 2.7.6 (default, Jan 11 2014, 14:34:26) > [GCC 4.8.2] on linux2 > Type "help", "copyright", "credits" or "license" for more information. >>>> import numpy >>>> > > So I don't know if there is also an issue with pymol. I would greatly > appreciate any help from the community, because Daniel Seeliger's plugin is > orders of magnitude better than autodocktools, and I don't want to > contemplate going back to the dark ages of analyzing my docking results.... > > Blake > > > > ------------------------------------------------------------------------ > > ------------------------------------------------------------------------------ > WatchGuard Dimension instantly turns raw network data into actionable > security intelligence. It gives you real-time visual feedback on key > security issues and trends. Skip the complicated setup - simply import > a virtual appliance and go from zero to informed in seconds. > http://pubads.g.doubleclick.net/gampad/clk?id=123612991&iu=/4140/ostg.clktrk > > > ------------------------------------------------------------------------ > > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net ------------------------------------------------------------------------------ WatchGuard Dimension instantly turns raw network data into actionable security intelligence. It gives you real-time visual feedback on key security issues and trends. Skip the complicated setup - simply import a virtual appliance and go from zero to informed in seconds. http://pubads.g.doubleclick.net/gampad/clk?id=123612991&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
