set_bond line_color, color_name, n. CA+CB
will color all bonds between CA and CB whatever color you put in as
color_name
If you're doing sticks instead of lines, you should use
set_bond stick_color, color_name, n. CA+CB
-David
On Mon, Mar 3, 2014 at 10:01 PM, I-Ji Jung <u5205...@anu.edu.au> wrote:
> Hi everyone,
>
> I have just started learning Pymol and PyMol seems to use a different
> colour convention than Molmol, i.e. the colour of a side chain starts half
> way between the CA and CB atoms (instead of starting at the CA). Do you
> know whether there would there be a way to start the side chain colour at
> the CA without changing the colour of the backbone?
>
> Any help will be greatly appreciated!
>
> Thank you.
>
> I-Ji
>
>
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