Currently right now Mobile PyMOL can be launched using file associations 
and URLs from any application that supports it (i.e., with file 
extensions pse, psw, sdf, mol2, mol, pdb)

We are in the process of releasing a new version of Mobile PyMOL with 
minor fixes and updates to support the newer versions of the PyMOL files.

The URL scheme "pymol://" will be supported in this next version (i.e., 
everything after "pymol://" is treated as a URL, so you need to replace 
a colon with "%3A").  We have not implemented fetch in mobile pymol yet, 
so you will need to supply the URL, not the PDB string.  We will put 
this on the list for the next version.

Blaine

On 9/17/14, 9:56 AM, Sula Armstrong wrote:
> Hello PyMol users
>
> Is there a way to launch PyMol on the iPad [from another application] 
> specifying additional parameters, e.g. a pdb code so that the app picks up 
> the RCSB's PDB and takes you straight to the view?
>
> E.g. .is there a custom URL scheme in use, like pymol://?PDB=xxxx that would 
> permit this?
>
> Many thanks in advance for any advice.
>
> Sula Armstrong
> Business Analyst, Strategic Innovation Group
> Royal Society of Chemistry
> Thomas Graham House,
> Science Park, Milton Road
> Cambridge, CB4 0WF, UK
>
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