Hi all, I generate two pseudoatoms "start_point" and "end_point" by center_of_mass.py. I load an object "tunnel" which has a sets of atoms in one chain. I want to measure the angle from each atoms in "tunnel" to "end_point" to "start_point". at the same time, I want to print the B-factor of atoms in "tunnel". To measure the angle, I programmed like this，but it doesn't work. I guess it's because get_angle function needs some particular variable format. By the way, how can I print the b factor of atom? Thanks, Lei
from pymol import cmd, stored def vertical_distance( start_point, end_point, tunnel ): centers = cmd.get_model(tunnel,1) for a in centers.atom: angle= cmd.get_angle(start_point, end_point,a) print angle return (start_point, end_point, tunnel) cmd.extend( "vertical_distance", vertical_distance ); ------------------------------------------------------------------------------ Meet PCI DSS 3.0 Compliance Requirements with EventLog Analyzer Achieve PCI DSS 3.0 Compliant Status with Out-of-the-box PCI DSS Reports Are you Audit-Ready for PCI DSS 3.0 Compliance? Download White paper Comply to PCI DSS 3.0 Requirement 10 and 11.5 with EventLog Analyzer http://pubads.g.doubleclick.net/gampad/clk?id=154622311&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
