D'uh. Thanks for pointing this out. Follow-up question: I want to show my glycosylated protein as cartoon, with the glycosides *and* the side chains they're attached to shown in sticks. How do I do that?
I show the protein as cartoon: Load foo.pdb Hide lines As cartoon Then I select the glycosides Select gluco, resn NDG Show sticks, gluco This only shows me the glycoside, but NOT the side chain it's attached to. I tried Select gluco, bound_to resn NDG Show sticks, gluco But that doesn't work, shows no side chains. Any help much appreciated! Thanks and Cheers Markus -----Original Message----- From: David Hall [mailto:li...@cowsandmilk.net] Sent: Monday, October 06, 2014 4:40 PM To: Markus Heller Cc: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] CONECT table http://www.pymolwiki.org/index.php/Connect_mode -David > On Oct 6, 2014, at 6:35 PM, Markus Heller <mhel...@cdrd.ca> wrote: > > Hello, > > How can I get PYMOL to use the CONECT table from a PDB file? My protein is > glycosylated, and I'd like to properly and automatically display the > glycosides including their linkage to the protein. > > Thanks and Cheers > Markus > > -- > Markus Heller, Ph.D. > NMR Scientist > CDRD - The Centre for Drug Research and Development > 2405 Wesbrook Mall, Fourth Floor | Vancouver, BC V6T 1Z3 | Main: > (604) 827-1147 > Direct: (604) 827-1122 | F: (604) 827-1299 | E: mhel...@cdrd.ca | > www.cdrd.ca > > > > > > > Follow us: > > This email and any files transmitted with it are confidential and intended > solely for the addressee. If you are not the named addressee you should not > disseminate, distribute, copy, or alter this email. > > > > > ---------------------------------------------------------------------- > -------- Slashdot TV. Videos for Nerds. Stuff that Matters. > http://pubads.g.doubleclick.net/gampad/clk?id=160591471&iu=/4140/ostg. > clktrk _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: > http://www.mail-archive.com/pymol-users@lists.sourceforge.net ------------------------------------------------------------------------------ Meet PCI DSS 3.0 Compliance Requirements with EventLog Analyzer Achieve PCI DSS 3.0 Compliant Status with Out-of-the-box PCI DSS Reports Are you Audit-Ready for PCI DSS 3.0 Compliance? Download White paper Comply to PCI DSS 3.0 Requirement 10 and 11.5 with EventLog Analyzer http://pubads.g.doubleclick.net/gampad/clk?id=154622311&iu=/4140/ostg.clktrk _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
