Hi all, I am using the maps and isosurface to represent a large protein protein complex, however whenever I generate a a map then isosurface it has holes in it areas that are not complete. I don’t understand as it surface representation it is a complete, closed surface? Anyone have any ideas as to why this is happening? Below is how I generate the maps and isosurface.
remove solvent alter all, b=40 alter all, q=1 set gaussian_resolution,15 set surface_quality, 2 # Clamp Loader Maps # Lagging A map_new Lagging_A-MAP, gaussian, 1, Lagging_A, 3 isosurface Lagging_A-SURF, Lagging_A-MAP # Leading B map_new Leading_B-MAP, gaussian, 1, Leading_B, 3 isosurface Leading_B-SURF, Leading_B-MAP Any help is greatly appreciated, Cheers, Jacob ------------------------------------------------------------------------------ Dive into the World of Parallel Programming! The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
