Hi Tsjerk, thanks for the report. This only affects MacPyMOL, or more specific the Python distribution that we bundle with it. We now also provide a MacPyMOL without the bundle, which uses the system Python and doesn't suffer from this problem. When downloading Incentive PyMOL, choose MacPyMOL-v1.7.x.x-syspython.dmg.
Cheers, Thomas On 19 Feb 2015, at 11:40, Tsjerk Wassenaar <tsje...@gmail.com> wrote: > Hey :) > > If I try to import scipy.linalg, Pymol quits abruptly. I could trace it to a > problem with the importing fblas, but can't work out what's wrong there. I've > checked my native implementation of Python 2.7 with SciPy, which works > without problem. Here's the log: > > > PyMOL(TM) Incentive Product - PyMOL Executable Build > Copyright (C) Schrodinger, LLC > > This PyMOL Executable Build is available only to PyMOL Power, Casual, and > Developer Users who have a valid license to use this software product. Any > other usage is specifically prohibited and may constitute a violation of > United States and international copyright laws. > > This Executable Build integrates and extends Open-Source PyMOL 1.7.4.0. > Detected OpenGL version 2.0 or greater. Shaders available. > Detected GLSL version 1.20. > OpenGL graphics engine: > GL_VENDOR: NVIDIA Corporation > GL_RENDERER: NVIDIA GeForce GT 750M OpenGL Engine > GL_VERSION: 2.1 NVIDIA-8.26.28 310.40.55b01 > Detected 8 CPU cores. Enabled multithreaded rendering. > 2015-02-19 17:36:38.355 MacPyMOL[46379:507] HID: Apple Internal Keyboard / > Trackpad > 2015-02-19 17:36:38.356 MacPyMOL[46379:507] HID: Counted 1 buttons on this > device. > 2015-02-19 17:36:38.356 MacPyMOL[46379:507] HID: Tsjerk Wassenaar‚Äôs Mouse > 2015-02-19 17:36:38.356 MacPyMOL[46379:507] HID: Counted 2 buttons on this > device. > 2015-02-19 17:36:38.357 MacPyMOL[46379:507] HID: Apple Internal Keyboard / > Trackpad > 2015-02-19 17:36:38.357 MacPyMOL[46379:507] HID: Counted 3 buttons on this > device. > 2015-02-19 17:36:38.357 MacPyMOL[46379:507] HID: Max number of buttons found: > 3. > PyMOL>import scipy.linalg.fblas > Fatal Python error: PyThreadState_Get: no current thread > Abort trap: 6 > > If you need more info, let me know. > > Cheers, > > Tsjerk > > -- > Tsjerk A. Wassenaar, Ph.D. -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Dive into the World of Parallel Programming The Go Parallel Website, sponsored by Intel and developed in partnership with Slashdot Media, is your hub for all things parallel software development, from weekly thought leadership blogs to news, videos, case studies, tutorials and more. Take a look and join the conversation now. http://goparallel.sourceforge.net/ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
