Hi Wenfu -
Cartoon putty representation varies the diameter of the putty tube based on the
B-factor column in the loaded PDB file. In your example file, all the
B-factors are 0.00. Perhaps you could use `cartoon tube` instead, which is
similar to putty, but uses a single cartoon_tube_radius setting to specify the
size of the tube.
Cheers,
Jared
--
Jared Sampson
Xiangpeng Kong Lab
NYU Langone Medical Center
http://kong.med.nyu.edu/
On Apr 13, 2015, at 11:39 AM, m...@mskcc.org<mailto:m...@mskcc.org> wrote:
Hi pymol users,
I have a pdb file, which is from the result of a molecular dynamics simulation.
I want to present the structure with cartoon putty in pymol.
But I can only make it cartoon putty in Macpymol 0.99 version. When I use
pymol1.7 or 1.3 version, the error is like this: Extrude-Warning: invalid putty
settings (division by zero)
I attach part of the pdb file and hope to get your suggestions.
Thanks,
Wenfu
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