Wow that is so cool. Is there any drawbacks I can expect?
> On Jun 23, 2015, at 1:44 PM, Thomas Holder <thomas.hol...@schrodinger.com> > wrote: > > Hi Jordan, > > if you want to use MacPyMOL with other libraries then I recommend to use the > "syspython" version that we offer (installer named > MacPyMOL-v1.7.x.x-syspython.dmg). It simply does not bundle a Python > distribution, but uses /usr/bin/python2.7 to run MacPyMOL. > > Related: > https://sourceforge.net/p/pymol/mailman/message/33531659/ > > Cheers, > Thomas > > On 21 Jun 2015, at 21:44, Jordan Willis <jwillis0...@gmail.com> wrote: > >> Hi, >> >> I’m trying to use the pandas library with MacPymol 1.7.05 but get the >> following with import pandas. >> >> File "/Library/Python/2.7/site-packages/pandas/__init__.py", line 6, in >> <module> >> from . import hashtable, tslib, lib >> File "numpy.pxd", line 157, in init pandas.hashtable >> (pandas/hashtable.c:22315) >> ValueError: numpy.dtype has the wrong size, try recompiling >> >> Obviously there is some conflict with PyMOLs python interpreter and the >> interpreter I installed pandas with. That’s fine, I’ll just compile pandas >> against PyMOLs python library, but I don’t know how to do it. >> >> I used pip within pymol >> >> python >> import pip >> pip.main([‘install’,’pandas’,’—reinstall’]) >> python end >> >> >> but got something wrong with the certificate in the pypy server >> >> /Applications/MacPyMOL.app/Contents/MacOS/MacPyMOL run on Sun Jun 21 >> 18:35:15 2015 >> Getting page https://pypi.python.org/simple/pandas/ >> Could not fetch URL https://pypi.python.org/simple/pandas/: connection >> error: [Errno 1] _ssl.c:504: error:14090086:SSL >> routines:SSL3_GET_SERVER_CERTIFICATE:certificate verify failed >> >> . I thought before I dug too deep, I would check with the list to see if >> anyone has added the pandas library that is compatible with pymol. Or more >> generally, how would one install third party libraries for use with pymol. >> If you don’t use pandas, I highly recommend it. It’s incredibly useful for >> manipulating data and it would be very handy to have with pymol scrips. >> >> Jordan > > -- > Thomas Holder > PyMOL Principal Developer > Schrödinger, Inc. > ------------------------------------------------------------------------------ Monitor 25 network devices or servers for free with OpManager! OpManager is web-based network management software that monitors network devices and physical & virtual servers, alerts via email & sms for fault. Monitor 25 devices for free with no restriction. Download now http://ad.doubleclick.net/ddm/clk/292181274;119417398;o _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
