I am not really sure what you are trying to do, but understanding cartoon putty may be too much for what you are trying to achieve. But I think that changing all you atoms to "CA" and using:
set cartoon_trace_atoms, 1 would do the trick. Cheers, João On Mon, Oct 5, 2015 at 10:42 AM, Clavel <dcla...@ibs.fr> wrote: > Hello everyone, > > I would like to create my own command within the pymol environement. > > I have currently a set of points in a pdb files with b-factors that i > would like to represent as the *cartoon putty* command is doing.(ie pdb > file) > The main problem is that I don't precisely know what *cartoon putty* is > doing. > > So I would like to know where the code of cartoon putty is hidden in pymol > and how the code could be modify in order to work on all atoms rather than > CA. > > Many thanks, > > > -- > *Damien CLAVEL* > Cellphone +33 7 81 66 61 70 > Landline +33 4 57 42 87 35 > PhD student at Laboratoire Chimie Physique (UP Sud) > and Institut de Biologie Structurale (EPN Campus) > -------------------------------------------------------------------------- > Laboratoire de Chimie Physique > <http://www.lcp.u-psud.fr/rubrique.php3?id_rubrique=266/> Institut de > Biologie Structurale <http://www.ibs.fr/spip.php?lang=en> > Bul. 350 Campus Orsay EPN Campus > 15, Av. Jean Perrin 6, rue Jules Horowitz > F-91405 ORSAY Cedex F-38000 GRENOBLE > > [image: Image and video hosting by TinyPic] > <http://tinypic.com?ref=28s7yvd> > > > ------------------------------------------------------------------------------ > > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > -- João M. Damas PhD Student Protein Modelling Group ITQB-UNL, Oeiras, Portugal Tel:+351-214469613
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