The safest way to do that would be to convert your trajectory to a format
readably by PyMOL, with trajectory manipulation tools such as trjconv (in
GROMACS) or catdcd (you can find it in the VMD website). PyMOL recognizes
the AMBER .trj format with the "Load_traj" function, so you can use that:
http://pymolwiki.org/index.php/Load_Traj
Or you can write the frames to a single PDB file, in which case PyMOL will
treat it as an NMR ensemble and load all frames (not recommended though,
because the file size might be enormous, depending on system size and the
number of frames).
In both cases, make sure you use the appropriate setting for manipulating
long trajectories:
http://pymolwiki.org/index.php/Defer_builds_mode
2015-10-06 12:39 GMT+03:00 Timofey Tyugashev <tyugas...@niboch.nsc.ru>:
> Is there any way to load .xtc or .trr files into PyMOL to view
> trajectories?
> This user page on the wiki suggest the way, but it looks like it's
> outdated and defunct now.
> pymolwiki.org/index.php/User:Speleo3/VMD_plugins
>
>
>
> ------------------------------------------------------------------------------
> Full-scale, agent-less Infrastructure Monitoring from a single dashboard
> Integrate with 40+ ManageEngine ITSM Solutions for complete visibility
> Physical-Virtual-Cloud Infrastructure monitoring from one console
> Real user monitoring with APM Insights and performance trend reports
> Learn More
> http://pubads.g.doubleclick.net/gampad/clk?id=247754911&iu=/4140
> _______________________________________________
> PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>
------------------------------------------------------------------------------
Full-scale, agent-less Infrastructure Monitoring from a single dashboard
Integrate with 40+ ManageEngine ITSM Solutions for complete visibility
Physical-Virtual-Cloud Infrastructure monitoring from one console
Real user monitoring with APM Insights and performance trend reports
Learn More http://pubads.g.doubleclick.net/gampad/clk?id=247754911&iu=/4140
_______________________________________________
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
