Hi Lucile, Thanks for the pse (off-list). Please hide the "nonbonded" representation:
PyMOL> hide nonbonded Nonbonded rep is shown by default. In ray tracing, those are rendered as cylinders, with a radius that depends on the zoom level, that's why you may not see them when zooming in. Cheers, Thomas On 07 Oct 2015, at 09:48, Thomas Holder <thomas.hol...@schrodinger.com> wrote: > Hi Lucile, > > This picture looks unusual, can you give some details on how you created it? > E.g. is this a full-atom protein structure, or a CA-only or pseudo-atom > coarse grain model? Did you modify any settings? > > The spheres look like "nb_spheres" representation, so maybe you simply need > to hide them: > > PyMOL> hide nb_spheres > > Cheers, > Thomas > > On 06 Oct 2015, at 04:00, Lucile Fischer <l.fisc...@iecb.u-bordeaux.fr> wrote: > >> Hello, >> thanks for providing such an useful list. >> My question is : can we avoid the appearance of "blobs" at atom locations >> when ray tracing at high resolution an helix cartoon? (see attached picture) >> thanks in advance >> Lucile >> >> <cartoon-helix-blobs.png> > > -- > Thomas Holder > PyMOL Principal Developer > Schrödinger, Inc. -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
