Smith,

Let's take this off-list. I will reply to you directly. We can send a summary 
to the list once it's working for you.

Cheers,
  Thomas

On 29 Nov 2015, at 22:13, Smith Liu <smith_liu...@163.com> wrote:

> Dear Thomas,
> 
> I do not know I still do something wrong.
> 
> First I load a PDB in pymol, then I input orient (with orient input the 
> molecule really moved significantly in display), then I input 
> transform_by_camera_rotation, then I input save /tmp/withneworientation.pdb, 
> the withneworientation.pdb was really saved, but the newly saved 
> withneworientation.pdb has the all atom orientations (x,y,z) exactly same as 
> those of the original PDB I initially input to the pymol for the process I 
> obtained the withneworientation.pdb.
> 
> Smith

-- 
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.


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