Hi Jared and Jordan, Just want to clarify that dots for hierarchical grouping is optional. Any name can be put into a group, with the "group" command. Grouping can happen automatically with dots, depending on the "group_auto_mode" setting.
Relevant settings for dotted name handling: group_auto_mode group_full_member_names Group command: http://pymolwiki.org/index.php/Group There is no proper API to get the (first-order) children of a group. You can get all molecular object children (including children from nested groups) by: cmd.get_object_list('(groupname)') Hope that helps. Cheers, Thomas On 25 Jan 2016, at 17:33, Sampson, Jared M. <jms2...@cumc.columbia.edu> wrote: > Hi Jordan - > > Grouped object names use dots to indicate group inheritance ("groupA.obj1"), > so maybe try something like this: > > ``` > from pymol import stored > > stored.group_names = [] > group_name = "groupA" > for obj in cmd.get_names(): > if obj[0:len(group_name)] == group_name: > # either add them to a list to use later > stored.group_names.append(obj) > # or run your `iterate` command here > #cmd.iterate(...) > print sorted(stored.group_names) > > ``` > > For me the printed dummy output looks like: > ['groupA', 'groupA.obj1', 'groupA.obj2', ... ] > > Hope that helps. > > Cheers, > Jared > >> On Jan 25, 2016, at 2:34 PM, Jordan Willis <jwillis0...@gmail.com> wrote: >> >> Hi, >> >> Is there a way to iterate through the names that have been grouped? >> >> iterate <groupName> >> >> doesn’t seem to do it because it kills my pymol app. >> >> Jordan -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ Site24x7 APM Insight: Get Deep Visibility into Application Performance APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month Monitor end-to-end web transactions and take corrective actions now Troubleshoot faster and improve end-user experience. Signup Now! http://pubads.g.doubleclick.net/gampad/clk?id=267308311&iu=/4140 _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
