Hi,
have a look at the 'align' command:
http://pymolwiki.org/index.php/Align
Best,
Julian
On Thu, Jan 28, 2016 at 7:13 AM, leila karami <karami.lei...@gmail.com>
wrote:
> Dear pymol users,
>
> I have 2 ligand molecules having similar backbone. There is little
> difference between them. When I load them in pymol, I have following figure:
> https://www.dropbox.com/s/k4g53p0qoxp58zs/pymol.png?dl=0
>
> I want to have these 2 ligands in superimposed form such as following:
> https://www.dropbox.com/s/v75uhrghy4johjy/pymol_2.png?dl=0
>
> Please guide me to do that.
>
> Best,
>
>
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