Hi Patrick and Andreas, "valence" is actually a bond-level setting, so you don't need to create individual objects. This should work:
set_bond valence, 1, organic Cheers, Thomas On 14 Jun 2016, at 10:01, Andreas Warnecke <4ndreas.warne...@gmail.com> wrote: > The easiest way to deal with this is setting the valence or valence_mode > individually for the object. > > set valence, 0, object1 > set valence, 1, object2 > > Cheers, > > Andreas > > On Mon, Jun 13, 2016 at 11:56 AM, McIntyre, Patrick <pm...@leicester.ac.uk> > wrote: > Dear PyMol users, > > I have a crystal structure of my protein with an unnatural amino acid > present. This amino acid has a double bond within it, which I would like to > display as such. However I would like the surrounding protein side chains to > not show double bond character. Is this possible at all? > > So far, I can either keep valence mode set to '0' and see no double bonds > across the whole protein, or set to '1' and see all of the double bonds, > which I don't want. > > My question is, is it possible to selectively 'set valency' onto a single > bond, or is it a global command which is not capable of this fine-tuning? I > am using MacPyMol if this makes a difference at all? > > Thanks for your help, > Patrick -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. ------------------------------------------------------------------------------ What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic patterns at an interface-level. Reveals which users, apps, and protocols are consuming the most bandwidth. Provides multi-vendor support for NetFlow, J-Flow, sFlow and other flows. Make informed decisions using capacity planning reports. https://ad.doubleclick.net/ddm/clk/305295220;132659582;e _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
