Dear Users,
I am trying to implement a script which uses a mix of pymol and python
scripting. I enclosed the main portion within the 'python' and 'python end'
commands. This runs perfectly fine in Pymol GUI mode, however when I tried it
with 'pymol -cg my_script.py', it generates an error:
Traceback (most recent call last):
File "/usr/lib/python2.7/dist-packages/pymol/parser.py", line 338, in parse
parsing.run_file(path,self.pymol_names,self.pymol_names)
File "/usr/lib/python2.7/dist-packages/pymol/parsing.py", line 452, in
run_file
execfile(file,global_ns,local_ns)
File "/usr/lib/python2.7/dist-packages/pymol/parsing.py", line 447, in
execfile
b.execfile(filename, global_ns, local_ns)
File "bondH.py", line 122
python end
^
SyntaxError: invalid syntax
How do I overcome this problem?
Best Regards,
Jingjie
**Disclaimer** The sender of this email does not represent Nanyang
Technological University and this email does not express the views or opinions
of the University.
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