Hi Murpholino, How about an interactive version instead of a fix-speed movie? The attached script maps the F1 key to advance to the next residue, and F2 to go back. It also colors atoms by density fit (red if they don't fit into the 1.2 sigma shell). It will only show sticks for the current residue, to make it more visible.
Cheers, Thomas
sc_inspector_F1.pml
Description: Binary data
> On Jun 15, 2018, at 4:36 PM, Murpholino Peligro <murpholi...@gmail.com> wrote: > > Dear PyMOL users...... > I found this bb_inspector at https://pymolwiki.org/index.php/MovieSchool_4 > It kinda does what I want, so I tweak it little bit ... (*.pml attached) > If you run the script and play the movie you'll see that sometimes the > sidechain is a little bit obscured by some density/atoms in the front. How do > I make them more visible? > > Lots of thanks > > > > > > 2018-06-15 8:31 GMT-05:00 Murpholino Peligro <murpholi...@gmail.com>: > Dear PyMOL users... > > Is there a way to orient every sidechain and take a picture to produce a > movie? > > Idea: By aligning the pdbs and maps and having them in the grid mode, with > this movie I could f take a quick look at how well my electron density fits > to all my models... > > Thanks > > <sc_inspector.pml>------------------------------------------------------------------------------ -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc.
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