Hello,
I got a structure (attached figure) of a lipid after docking it with a
protein. The original structure before the docking is in SDF file, not
regular PDB. I've never seen a docked structure like this with many of
the atoms having more bonds than they actually can have like some carbons
(blue) are having five even six bonds in the display, and the whole
molecule looks like a plate. Is there anyone who also have met this
problem before or any idea to get the structure back normal display.
Thank you and I appreciate any suggestions and ideas.
Best,
Wei
[image: UNADJUSTEDNONRAW_thumb_f09.jpg]
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