Hi Markus,

Is there still a gap (between atoms and cartoon) when you turn on the backbone 
residues in question?

J

From: Markus Heller <mhel...@cdrd.ca>
Sent: Thursday, 6 September 2018 6:26 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] Hbond to backbone cartoon

Hi all,

what's the best way to show a hydrogen bond to a backbone atom in the following 
scenario:

Protein shown as cartoon, ligand as sticks, binding site residues (within 5A of 
ligand) shown as lines, and sidechain help is on.

If the ligand forms a hydrogen bond with a backbone atom, the dashes don't 
touch the cartoon, but leave a gap.  What's the recommended solution (or 
workaround) to avoid this gap?

Thanks
Markus
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