Thank you vevry much Annemarie it worked
----------------------------------------------------------
Stéphane Abel, Ph.D.
Commissariat à l’Energie Atomique et aux Energies Alternatives
Centre de Saclay DSV/ISVFJ/SB2SM
Bat 528, Office 138C
Gif-sur-Yvette, F-91191 FRANCE
Phone (portable) : +33 6 49 37 70 60
----------------------------------------------------------------------
Message: 1
Date: Thu, 6 Jun 2019 12:49:56 +0200
From: ahoneg <annemarie.honeg...@uzh.ch>
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] colored secondary structure of two chains with
different colors
Message-ID: <c34b87e1-c9e6-4ecc-a664-7cb074e41...@uzh.ch>
Content-Type: text/plain; charset=utf-8
Dear St?phane,
by default, the cartoon representation takes its color from the color of the
c-alpha atoms of your protein.
However, you can override this default and assign a specific color to the
cartoon representation of a given selection by:
set cartoon_color, color, (selection)
e.g.
set cartoon_color, red, resi 1-60
best regards
Annemarie Honegger
____________________________________________________________
Dr. Annemarie Honegger
Dept. of Biochemistry
Z?rich University
Winterthurerstrasse 190
8057 Z?rich
Switzerland
e-mail: honeg...@bioc.uzh.ch
phone: +41 44 635 55 62
fax: +41 44 635 57 12
>
> Message: 4
> Date: Thu, 6 Jun 2019 10:26:29 +0000
> From: ABEL Stephane <stephane.a...@cea.fr>
> To: "h. adam steinberg" <h.adam.steinb...@gmail.com>
> Cc: "pymol-users@lists.sourceforge.net"
> <pymol-users@lists.sourceforge.net>
> Subject: Re: [PyMOL] colored secondary structure of two chains with
> different colors
> Message-ID:
> <3e39b768bb199548ab18f7289e7534af4b042...@exdag0-b0.intra.cea.fr>
> Content-Type: text/plain; charset="Windows-1252"
>
> Hi Adam
>
> OK I can colored each chain with different colors. But it is not exactly what
> I want. Indeed in the figure*
>
> - the AA are in sticks with the different colors for each atom --> I can do
> this
> - the beta sheet in the monomer are in red and blue ---> I can "not" do this
> even if I use your suggestion
>
> I would like in two representations at the same time and the necessary
> commands for adding them in a script.
> ript.
>
> *https://cdn.rcsb.org/images/rutgers/ma/1mag/1mag.pdb-500.jpg
>
> Thank you again.
>
> St?phane
>
>
> ----------------------------------------------------------
> St?phane Abel, Ph.D.
> Commissariat ? l?Energie Atomique et aux Energies Alternatives
> Centre de Saclay DSV/ISVFJ/SB2SM
> Bat 528, Office 138C
> Gif-sur-Yvette, F-91191 FRANCE
> Phone (portable) : +33 6 49 37 70 60
> ________________________________________
> De : h. adam steinberg [h.adam.steinb...@gmail.com]
> Envoy? : mercredi 5 juin 2019 21:36
> ? : ABEL Stephane
> Objet : Re: [PyMOL] colored secondary structure of two chains with different
> colors
>
> If you change your mouse / selection mode to chains, you can then click on
> one of the monomers and choose a color for it from the (sale) in the right
> side panel drop down menu. Then click on the other monomer and do the same.
>
> Is that what you are asking for?
>
>> On Jun 5, 2019, at 1:23 PM, ABEL Stephane <stephane.a...@cea.fr> wrote:
>>
>> Hello all
>>
>> I have a pdb structure of gramicidin A dimer (PDB 1MAG) and I would like to
>> color the beta sheets of each monomer with different colors (for instance
>> in red and blue colors) in Figure
>>
>> https://cdn.rcsb.org/images/rutgers/ma/1mag/1mag.pdb-500.jpg
>>
>> How to do this ?
>>
>> Thank you
>>
>> St?phane
>>
>>
>>
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>
>
>
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