Dear Pymol Users! I need to process input PDB via pymol (this time no need to do it via no-gui mode!!) to remove chain id from PDB.
I am using alter command to do it with the following syntax #rename chain A to phantom chain :-) alter (chain A),chain='' the problem that in my initial PDBs there are many TER records (e.g. to separate protein from ligand etc), which should be keeped after such post-processing in the form of original PDB (with chain A). I have tried to do this before saving of the PDB get pdb_use_ter_records however, as the result, all the TER records were removed from the processed pdb. How I could fix it? Many thanks in advance! _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
