Hi James,
I am not sure what the exact cause of your issue is but I think if you make a
selection first then apply the transparency to the selection that should work,
i.e.:
sele ss H+S
set cartoon_transparency, 0.5, sele
Something to do with selection based transparency settings not enabling newer
ones to be made
Cheers,
Ali
On 26/6/19, 6:18 pm, "James Starlight" <jmsstarli...@gmail.com> wrote:
Dear pymol users!
I am trying to set transparency based on the secondary structure using
pymol selection algebra
# set transparency to all helix and sheets but not loops
set cartoon_transparency, 0.5, ss H+S
which produce the following output
PyMOL>set cartoon_transparency, 0.5, ss H+S
Setting: cartoon_transparency set for 144 atoms in object
"0190_before_minim".
but actually do nothing in terms of visualization.
Could you suggest me how it would be possible to fix it?
Thanks in advance!
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