Hello all,
I am trying to color several proteins by different factors, e.g., distance from
a given point (here the origin). To do this, I replace the q-factor (or
b-factor) with my variable of choice. However, most of my files have one or a
few residues that are for some reason not affected by the alter_state (e.g.,
pdb = 1ihm). I can't see any distinction in these residues compared to the
others.
example code:
fetch 1ihm
alldist = []
iterate_state 1, all, alldist.append((x**2+y**2+z**2)**0.5)
di = iter(alldist)
alter all, b = next(di)
spectrum b
Thank you,
Joe
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