Hi Pedro, There is a "dump" command which exports all surface points and normals to a text file.
dump /tmp/dump.txt, acceptor_17 Each line will have 6 numbers, 3 for the position, and 3 for the normal. For cmd.get_volume_field you need the map name, not the surface name. data = cmd.get_volume_field('acceptor') print(data) Hope that helps. Cheers, Thomas > On Oct 30, 2019, at 6:42 AM, Pedro Lacerda <pslace...@gmail.com> wrote: > > And cmd.get_volume_field is returning -1. > > Em qua, 30 de out de 2019 às 02:00, Pedro Lacerda <pslace...@gmail.com> > escreveu: > Hi, > > How can I access the underlying coordinates of acceptor, donor and apolar > surface objects on the given session given by the following server? Coords > akin to dot representation would suffice. > > http://fragment-hotspot-maps.ccdc.cam.ac.uk/results_table > http://fragment-hotspot-maps.ccdc.cam.ac.uk/result/1542 > > An example of session is attached. > > -- > Pedro Sousa Lacerda > > Laboratório de Bioinformática e Modelagem Molecular > Faculdade de Farmácia / UFBA > > @pslacerda > +55 71 9 9981-1856 > > ARSB_hotspots.pse > > > -- > Pedro Sousa Lacerda > > Laboratório de Bioinformática e Modelagem Molecular > Faculdade de Farmácia / UFBA > > @pslacerda > +55 71 9 9981-1856 > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe