Hi Pedro,
There is a "dump" command which exports all surface points and normals to a
text file.
dump /tmp/dump.txt, acceptor_17
Each line will have 6 numbers, 3 for the position, and 3 for the normal.
For cmd.get_volume_field you need the map name, not the surface name.
data = cmd.get_volume_field('acceptor')
print(data)
Hope that helps.
Cheers,
Thomas
> On Oct 30, 2019, at 6:42 AM, Pedro Lacerda <[email protected]> wrote:
>
> And cmd.get_volume_field is returning -1.
>
> Em qua, 30 de out de 2019 às 02:00, Pedro Lacerda <[email protected]>
> escreveu:
> Hi,
>
> How can I access the underlying coordinates of acceptor, donor and apolar
> surface objects on the given session given by the following server? Coords
> akin to dot representation would suffice.
>
> http://fragment-hotspot-maps.ccdc.cam.ac.uk/results_table
> http://fragment-hotspot-maps.ccdc.cam.ac.uk/result/1542
>
> An example of session is attached.
>
> --
> Pedro Sousa Lacerda
>
> Laboratório de Bioinformática e Modelagem Molecular
> Faculdade de Farmácia / UFBA
>
> @pslacerda
> +55 71 9 9981-1856
>
> ARSB_hotspots.pse
>
>
> --
> Pedro Sousa Lacerda
>
> Laboratório de Bioinformática e Modelagem Molecular
> Faculdade de Farmácia / UFBA
>
> @pslacerda
> +55 71 9 9981-1856
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--
Thomas Holder
PyMOL Principal Developer
Schrödinger, Inc.
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