Also, keep in mind that pdb2pqr isn't python3 friendly so you will have to
use an externally generated pqr file. The current mechanism for calling
pdb2pqr from within the APBS Tool results in pdb2pqr running under the same
python as pymol.
Jack
On Mon, Dec 2, 2019 at 5:58 PM Jack Howarth <howarth.mailing.li...@gmail.com>
wrote:
> You need more patches in your installed Pmw 2.0.0. On MacPorts, we use...
>
>
> https://github.com/macports/macports-ports/blob/master/python/py-pmw/files/patch-pmw2-py36.diff
>
> and
>
>
> https://github.com/macports/macports-ports/blob/master/python/py-pmw/files/patch-pmw2.diff
>
> applied over Pmw_2_0_0.
> Jack
>
> On Mon, Dec 2, 2019 at 2:43 PM RDirective <rdirect...@gmail.com> wrote:
>
>> Dear all,
>>
>>
>> I get the following errors when trying to launch the APBS plugin from the
>> plugins menu
>>
>>
>> Traceback (most recent call last):
>>
>> File
>> "/home/quyen/Pymol/install/lib64/python/pmg_tk/startup/apbs_tools.py", line
>> 322, in <lambda>
>> command = lambda s=self: APBSTools2(s))
>>
>> File
>> "/home/quyen/Pymol/install/lib64/python/pmg_tk/startup/apbs_tools.py", line
>> 617, in __init__
>> self.notebook = Pmw.NoteBook(self.dialog.interior())
>>
>> File "/usr/lib/python3.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwNoteBook.py",
>> line 60, in __init__
>> Pmw.Color.bordercolors(self, self['hull_background'])
>>
>> File "/usr/lib/python3.7/site-packages/Pmw/Pmw_2_0_0/lib/PmwColor.py",
>> line 359, in bordercolors
>> '#%04x%04x%04x' % (lightRGB[0], lightRGB[1], lightRGB[2]),
>> TypeError: %x format: an integer is required, not float
>>
>>
>> Pymol source Version 2.4.0a0
>>
>>
>> Best,
>>
>> Quyen
>> _______________________________________________
>> PyMOL-users mailing list
>> Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
>> Unsubscribe:
>> https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
>
>
_______________________________________________
PyMOL-users mailing list
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Unsubscribe:
https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
