Hi Ting, This will display the assemblies (biological units) in a grid. The result should look like in the attached image.
set assembly set all_states set grid_mode fetch 1igt 1s58 3j3i 2ztn 6ui6 5wtf 3iyo, type=mmtf zoom The "assembly" setting replaces the use of type=pdb1. It works with type=cif and type=mmtf. https://pymolwiki.org/index.php/Assembly Hope that helps. Cheers, Thomas > On Jan 20, 2020, at 7:21 AM, Ting Hu via PyMOL-users > <pymol-users@lists.sourceforge.net> wrote: > > Dear Pymol-users support, > > I want to compare the sizes of different virus and IgG in Pymol. But they are > exhibiting similar sizes. how can i change that? > > the commands I enter are as below: > fetch 1igt, type=pdb1 > fetch 1s58, type=pdb1 set all_states, on > fetch 3j3i, type=pdb1 set all_states, on > fetch 2ztn, type=pdb1 set all_states, on > fetch 6ui6, type=pdb1 set all_states, on > fetch 5wtf, type=pdb1 set all_states, on > fetch 3iyo, type=pdb1 set all_states, on > fetch 1s58, type=pdb1 set all_states, on > > Best regrds > Ting > > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc.
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