The dots and question marks are appropriate. You did not export a PDB file, but instead an mmCIF/PDBx file.

For an explanation of what the fields mean, you can look at http://mmcif.wwpdb.org/docs/tutorials/content/atomic-description.html


On 1/21/20 9:46 PM, Ofir Shein Lumbroso wrote:
Hi all,
I'm a new user of PyMOL and I'm trying to export a PDB file from a PyMOL session and It seems to have some errors. I'm using the default settings and I'm getting some dots and question marks in the exported PDB file, can you please help?

I attached a corrupted PDB file for example.

Thanks!
Ofir

--
*Ofir Shein-Lumbroso*
*m:* +61 406 276 801  | *e: *ofir.sh...@gmail.com <mailto:ofir.sh...@gmail.com>


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