It still very hard to see the differences and similarities. They just look like a mess. Is there a good way to reveal the differences and similarities? Are the stereochemistry of all the carbons different? It seems that the best way is just to show the different ones.
On 3/24/20, sujiaqi <s...@im.ac.cn> wrote: > You can just input this command to deal with the problem. > > PyMOL>align MOL002088, MOL002424 > Match: read scoring matrix. > Match: assigning 1 x 1 pairwise scores. > MatchAlign: aligning residues (1 vs 1)... > MatchAlign: score 5.000 > ExecutiveAlign: 93 atoms aligned. > ExecutiveRMS: 2 atoms rejected during cycle 1 (RMSD=5.48). > Executive: RMSD = 5.238 (91 to 91 atoms) > > From: Peng Yu > Sent: 2020年3月25日 6:28 > To: pymol-users@lists.sourceforge.net > Subject: [PyMOL] Compare two structures with the same connectivity > butdifferent stereochemistry? > > I'd like to compare the difference between the two structures which > have the same connectivity but different stereochemistry. Could > anybody show me if there is a way to do so in pymol? Thanks. > > http://tcmspw.com/tcmspmol/MOL002088.mol2 > http://tcmspw.com/tcmspmol/MOL002424.mol2 > > -- > Regards, > Peng > > > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe > > -- Regards, Peng _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
