I second G.V.'s question. It touches upon a problem that I have been having.
The cartoon representation is shown when the structure is loaded from disk or fetched from the PDB. The default cartoon representation overrides the settings in my pymolrc file. I have the following in my .pymolrc file. I do not have a /.pymolrc-settings.py file or any other .pymolrc* files. hide cartoon show sticks I still get the cartoon representation when I fetch a structure or load a structure. The user should be able to control how the structure appears when it is first loaded. This behavior started occurring with PyMOL 2. Best regards, Blaine Blaine Mooers, Ph.D. Associate Professor Department of Biochemistry and Molecular Biology, College of Medicine Director of the Laboratory of Biomolecular Structure and Function Academic Director, Biomolecular Structure Core, COBRE in Structural Biology Full Member, Cancer Biology Program, Stephenson Cancer Center University of Oklahoma Health Sciences Center Mailing Address: 975 NE 10th Street, BRC 466 Oklahoma City, OK 73104-5419 Office: 405-271-8300 Lab: 405-271-8312 Websites: Faculty page: https://basicsciences.ouhsc.edu/bmb/Faculty/bio_details/mooers-blaine-hm-phd BSC-OKC (LBSF): https://research.ouhsc.edu/Core-Facilities/Laboratory-of-Biomolecular-Structure-and-Function COBRE in Structural Biology: https://www.ou.edu/structuralbiology ________________________________________ From: Gundala Viswanath [gunda...@gmail.com] Sent: Thursday, November 11, 2021 11:39 PM To: pymol-users Subject: [EXTERNAL] [PyMOL] How to set spectrum color by default in Pymol Hi, Is there a way to do that? I tried putting this line in .pymolrc, but it doesn't work. spectrum b, red_yellow_green_cyan_blue, minimum=50, maximum=90 I attached the example PDB file, where the B-factor column is used for the coloring. An this is the image: [Screen Shot 2021-11-12 at 14.38.06.png] G.V/
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