I am using the combination of two presets to visualise protein-ligand interactions:
1) to visualise protein-ligand contacts preset.ligand_cartoon('${output}*',_self=cmd) 2) and then to change the representation of the ligand: preset.ball_and_stick(selection='my_system and not polymer', mode=1) Unfortunately after the execution of the second command I do not see anymore dashed yellow lines for non-polar contacts between protein and ligand Is there any quick command, which may return it for a multi-model file and better to change the color of the dotted line from yellow (default) to another color (blue)? Thank you in advance! Enrico _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe