Dear Pymol Users! My Pymol batch script loads all pdb filles from the output directory split states and saves the pse session
pymol "${output}"/*.pdb -c -d " from pymol import cmd #cmd.load('${output}/*.pdb') cmd.set('grid_mode','1') cmd.orient() cmd.bg_color('white') cmd.show('sticks', 'not polymer') cmd.show('spheres', 'not polymer') cmd.set('stick_radius', '0.12', 'not polymer') cmd.set('sphere_scale', '0.20', 'not polymer') cmd.save('${output_pse}/${project}.pse') " 1) As you may see I load the filles using bash syntax as *.pdb. Is it possible to do it directly in the pymol script e.g. using glob ? Could you please show me the example of such syntax? e.g. I''e already tried #cmd.load('${output}/*.pdb') but it did not recognize the pattern. 2) is it possible to print the name of each separate pdb in the splitted grid display? Many thanks in advance! Cheers Enrico _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe