> On 5 Sep 2022, at 16:39, Bruhn, Matthias <matthias.br...@twincore.de> wrote: > > Dear pymol users, > does anybody recognize this type of bond and can explain me what this is? It > appears between a Lysine and an Aspartic acid. I expect a hydrogen bond, but > for some reason PyMol connects the two amino acids with a stick?
Pymol will create a bond if the distance between the hydrogen of this lysine and the aspartate is too short. I guess that the protonation of this protein was not properly done. Florian
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