Have you tried this:
https://pymolwiki.org/index.php/Split_object

------------------------------

*Saurabh Gayali*
Business Analyst [Excelra], Former Research Scientist [IGIB]
saurabh.gay...@gmail.com / +91 8800412916
<http://example.com/>Bangalore, India


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03/08/23,
01:27:34 pm

On Thu, Aug 3, 2023 at 8:15 AM Mukhopadhyay, Shreya via PyMOL-users <
pymol-users@lists.sourceforge.net> wrote:

> Public
>
> Hello All,
>
>
>
> I am trying to separate out two molecules(one copy for each of RSVF F1 and
> F2) from one pdb (6OUS). It’s a trimeric protein bound to a Fab.
>
>
>
> I want to separate out RSVF1 and F2 proteins as one object from the bound
> antibody, ie create one object with only chains A,C,E and B,D,F. If you
> could explain the commands to use that will be really helpful to me.
>
>
>
> Thanks,
>
> Shreya
>
>
>
>
>
> Shreya Mukhopadhyay, PhD. (She/Her)
> *Post Doc Fellow (Infectious Diseases and Vaccines-Discovery)*
>
> 770 Sumneytown Pike, West Point B46, 2048-C,  PA 19486
>
>
>
>
>
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