I got the following errors running the tests
bash$ python
Python 2.5.1 (r251:54863, May 2 2007, 16:56:35)
[GCC 4.1.2 (Ubuntu 4.1.2-0ubuntu4)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import tables
>>> tables.test()
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
PyTables version: 2.0.2
HDF5 version: 1.6.6
NumPy version: 1.0.3
Zlib version: 1.2.3
LZO version: 2.02 (Oct 17 2005)
BZIP2 version: 1.0.3 (15-Feb-2005)
Python version: 2.5.1 (r251:54863, May 2 2007, 16:56:35)
[GCC 4.1.2 (Ubuntu 4.1.2-0ubuntu4)]
Platform: linux2-i686
Byte-ordering: little
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Performing only a light (yet comprehensive) subset of the test suite.
If you want a more complete test, try passing the --heavy flag to this
script
(or set the 'heavy' parameter in case you are using tables.test() call).
The whole suite will take more than 2 minutes to complete on a
relatively
modern CPU and around 80 MB of main memory.
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Numeric (version 24.2) is present. Adding the Numeric test suite.
numarray (version 1.5.2) is present. Adding the numarray test suite.
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
............................................................................................................................................................................F.F...................F......HDF5-DIAG:
Error detected in HDF5 library version: 1.6.6 thread 0. Back trace follows.
#000: H5Dio.c line 593 in H5Dread(): can't read data
major(15): Dataset interface
minor(24): Read failed
#001: H5Dio.c line 850 in H5D_read(): can't read data
major(15): Dataset interface
minor(24): Read failed
#002: H5Dio.c line 1858 in H5D_chunk_read(): file gather failed
major(05): Low-level I/O layer
minor(24): Read failed
#003: H5Dselect.c line 205 in H5D_select_fgath(): read error
major(14): Dataspace interface
minor(24): Read failed
#004: H5Distore.c line 2060 in H5D_istore_readvv(): unable to read raw
data chunk
major(05): Low-level I/O layer
minor(24): Read failed
#005: H5Distore.c line 1564 in H5D_istore_lock(): data pipeline read
failed
major(19): Data filters layer
minor(24): Read failed
#006: H5Z.c line 977 in H5Z_pipeline(): required filter is not
registered
major(19): Data filters layer
minor(24): Read failed
E..........................................................................................................................................................................................................................................................................F......................F.............................................F......................F..............................................................................................................................................................................................FFF....................................................................................................................................................................................................................................................................................................................................................................................................................F....F...........................
......................F....F....F....F....F............................................F......................................................................................................................................................................................................F...........................................................................................................................F.....F............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
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======================================================================
ERROR: None (tables.tests.test_backcompat.VLArrayTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 247, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_backcompat.py", line 109, in test01_backCompat
assert allequal(vlarray1[1], Numeric.array([5, 6, 7], typecode='i'),
File "tables/vlarray.py", line 592, in __getitem__
return self.read(key)[0]
File "tables/vlarray.py", line 719, in read
listarr = self._readArray(start, stop, step)
File "hdf5Extension.pyx", line 1210, in
hdf5Extension.VLArray._readArray
HDF5ExtError: VLArray._readArray: Problems reading the array data.
======================================================================
FAIL: None (tables.tests.test_create.FiltersCase1)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_create.py", line 513, in test01_checkFilters
assert repr(gfilters) == repr(object.filters)
AssertionError
======================================================================
FAIL: None (tables.tests.test_create.FiltersCase2)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_create.py", line 513, in test01_checkFilters
assert repr(gfilters) == repr(object.filters)
AssertionError
======================================================================
FAIL: Keeping filters when copying a file.
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 247, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_create.py", line 1360, in test01_copyFile
self._test_copyFile()
File "tables/tests/test_create.py", line 1352, in _test_copyFile
self._check_filters(copyf, filters=filters)
File "tables/tests/test_create.py", line 1340, in _check_filters
"node ``%s`` should have filters" % node._v_pathname )
AssertionError: node ``/implicit_no/implicit_no/explicit_yes`` should
have filters
======================================================================
FAIL: None (tables.tests.test_tables.CompressZLIBTablesTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 247, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_tables.py", line 1196, in test05_filtersTable
assert table.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_tables.CompressZLIBShuffleTablesTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 247, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_tables.py", line 1196, in test05_filtersTable
assert table.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_tables.AllFiltersTablesTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 247, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_tables.py", line 1196, in test05_filtersTable
assert table.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_tables.CompressTwoTablesTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 247, in newmethod
return oldmethod(self, *args, **kwargs)
File "tables/tests/test_tables.py", line 1196, in test05_filtersTable
assert table.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_tables.CloseCopyTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_tables.py", line 3988, in test04_copy
assert 6 == table2.filters.complevel
AssertionError
======================================================================
FAIL: None (tables.tests.test_tables.CloseCopyTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_tables.py", line 4059, in test05_copy
assert 6 == table2.filters.complevel
AssertionError
======================================================================
FAIL: None (tables.tests.test_tables.CloseCopyTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_tables.py", line 4133, in test05b_copy
assert 6 == table2.filters.complevel
AssertionError
======================================================================
FAIL: None (tables.tests.test_earray.ZlibComprTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_earray.py", line 181, in test01_iterEArray
assert earray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_earray.ZlibShuffleTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_earray.py", line 181, in test01_iterEArray
assert earray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_earray.Numeric1TestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_earray.py", line 181, in test01_iterEArray
assert earray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_earray.Numeric2TestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_earray.py", line 181, in test01_iterEArray
assert earray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_earray.NumericComprTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_earray.py", line 181, in test01_iterEArray
assert earray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_earray.Numarray2TestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_earray.py", line 181, in test01_iterEArray
assert earray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_earray.NumarrayComprTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_earray.py", line 181, in test01_iterEArray
assert earray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_earray.AllFiltersTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_earray.py", line 181, in test01_iterEArray
assert earray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_vlarray.ZlibComprTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_vlarray.py", line 127, in test01_read
assert vlarray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_vlarray.ShuffleComprTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_vlarray.py", line 127, in test01_read
assert vlarray.filters.complevel == self.compress
AssertionError
======================================================================
FAIL: None (tables.tests.test_vlarray.AllFiltersTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/test_vlarray.py", line 127, in test01_read
assert vlarray.filters.complevel == self.compress
AssertionError
----------------------------------------------------------------------
Ran 5931 tests in 97.663s
FAILED (failures=21, errors=1)
-------------------------------------------------------------------------
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