Francesc Altet wrote:
> Hi Alex,
>
> A Friday 21 March 2008, Alex Olivas escrigué:
>
>> I just built pytables and hdf5 on my Intel Mac and ran the tests
>> and got two failures. Here's my system information :
>>
>> -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
>> =-=-=-= PyTables version: 2.0.3
>> HDF5 version: 1.8.0
>> NumPy version: 1.0.5.dev4851
>> Zlib version: 1.2.3
>> BZIP2 version: 1.0.4 (20-Dec-2006)
>> Python version: 2.5.1 (r251:54863, Feb 4 2008, 21:48:13)
>> [GCC 4.0.1 (Apple Inc. build 5465)]
>> Platform: darwin-i386
>> Byte-ordering: little
>> -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-
>> =-=-=-=
>>
>> This is the output of the tests:
>>
>> =====================================================================
>> = FAIL: Checking representation of a nested Table
>> ---------------------------------------------------------------------
>> - Traceback (most recent call last):
>> File "tables/tests/common.py", line 247, in newmethod
>> return oldmethod(self, *args, **kwargs)
>> File "tables/tests/test_nestedtypes.py", line 700, in test00a_repr
>> """)
>> AssertionError
>>
>> =====================================================================
>> = FAIL: Checking representation of a nested Table
>> ---------------------------------------------------------------------
>> - Traceback (most recent call last):
>> File "tables/tests/common.py", line 247, in newmethod
>> return oldmethod(self, *args, **kwargs)
>> File "tables/tests/test_nestedtypes.py", line 700, in test00a_repr
>> """)
>> AssertionError
>>
>> ---------------------------------------------------------------------
>> - Ran 5746 tests in 61.240s
>>
>
> This looks like the NumPy team has chosen for 1.0.5 a different
> representation for any on its data types. With NumPy 1.0.4 the tests
> passes to me:
>
> $ python tables/tests/test_nestedtypes.py ReadNoReopen.test00a_repr
> verbose
> Running ReadNoReopen.test00a_repr
> ---------------------------------
> str(tbl)--> /test (Table(2,)) 'test00'
> repr(tbl)--> /test (Table(2,)) 'test00'
> description := {
> "x": Int32Col(shape=(2,), dflt=0, pos=0),
> "Info": {
> "value": ComplexCol(itemsize=16, shape=(), dflt=0j, pos=0),
> "y2": Float64Col(shape=(), dflt=1.0, pos=1),
> "Info2": {
> "name": StringCol(itemsize=2, shape=(), dflt='', pos=0),
> "value": ComplexCol(itemsize=16, shape=(2,), dflt=0j, pos=1),
> "y3": Time64Col(shape=(2,), dflt=1.0, pos=2),
> "z3": EnumCol(enum=Enum({'r': 4, 'b': 1, 'g': 2}), dflt='r',
> base=Int32Atom(shape=(), dflt=0), shape=(2,), pos=3)},
> "name": StringCol(itemsize=2, shape=(), dflt='', pos=3),
> "z2": UInt8Col(shape=(), dflt=1, pos=4)},
> "color": StringCol(itemsize=2, shape=(), dflt=' ', pos=2),
> "info": {
> "Name": StringCol(itemsize=2, shape=(), dflt='', pos=0),
> "Value": ComplexCol(itemsize=16, shape=(), dflt=0j, pos=1)},
> "y": Float64Col(shape=(2, 2), dflt=1.0, pos=4),
> "z": UInt8Col(shape=(), dflt=1, pos=5)}
> byteorder := 'little'
> chunkshape := (56,)
>
> .
> ----------------------------------------------------------------------
> Ran 1 test in 0.087s
>
> OK
>
> Could you please run the:
>
> $ python tables/tests/test_nestedtypes.py ReadNoReopen.test00a_repr
> verbose
>
> line (do not forget the 'verbose' option) and send me back the ouput?
> I'll update the test to deal with the possible difference in NumPy
> representations.
>
> Thanks,
>
>
Here it is:
Running ReadNoReopen.test00a_repr
---------------------------------
str(tbl)--> /test (Table(2L,)) 'test00'
repr(tbl)--> /test (Table(2L,)) 'test00'
description := {
"x": Int32Col(shape=(2,), dflt=0, pos=0),
"Info": {
"value": ComplexCol(itemsize=16, shape=(), dflt=(0.0+0.0j), pos=0),
"y2": Float64Col(shape=(), dflt=1.0, pos=1),
"Info2": {
"name": StringCol(itemsize=2, shape=(), dflt='', pos=0),
"value": ComplexCol(itemsize=16, shape=(2,), dflt=(0.0+0.0j), pos=1),
"y3": Time64Col(shape=(2,), dflt=1.0, pos=2),
"z3": EnumCol(enum=Enum({'r': 4, 'b': 1, 'g': 2}), dflt='r',
base=Int32Atom(shape=(), dflt=0), shape=(2,), pos=3)},
"name": StringCol(itemsize=2, shape=(), dflt='', pos=3),
"z2": UInt8Col(shape=(), dflt=1, pos=4)},
"color": StringCol(itemsize=2, shape=(), dflt=' ', pos=2),
"info": {
"Name": StringCol(itemsize=2, shape=(), dflt='', pos=0),
"Value": ComplexCol(itemsize=16, shape=(), dflt=(0.0+0.0j), pos=1)},
"y": Float64Col(shape=(2, 2), dflt=1.0, pos=4),
"z": UInt8Col(shape=(), dflt=1, pos=5)}
byteorder := 'little'
chunkshape := (56,)
/test (Table(2L,)) 'test00'
description := {
"x": Int32Col(shape=(2,), dflt=0, pos=0),
"Info": {
"value": ComplexCol(itemsize=16, shape=(), dflt=(0.0+0.0j), pos=0),
"y2": Float64Col(shape=(), dflt=1.0, pos=1),
"Info2": {
"name": StringCol(itemsize=2, shape=(), dflt='', pos=0),
"value": ComplexCol(itemsize=16, shape=(2,), dflt=(0.0+0.0j), pos=1),
"y3": Time64Col(shape=(2,), dflt=1.0, pos=2),
"z3": EnumCol(enum=Enum({'r': 4, 'b': 1, 'g': 2}), dflt='r',
base=Int32Atom(shape=(), dflt=0), shape=(2,), pos=3)},
"name": StringCol(itemsize=2, shape=(), dflt='', pos=3),
"z2": UInt8Col(shape=(), dflt=1, pos=4)},
"color": StringCol(itemsize=2, shape=(), dflt=' ', pos=2),
"info": {
"Name": StringCol(itemsize=2, shape=(), dflt='', pos=0),
"Value": ComplexCol(itemsize=16, shape=(), dflt=(0.0+0.0j), pos=1)},
"y": Float64Col(shape=(2, 2), dflt=1.0, pos=4),
"z": UInt8Col(shape=(), dflt=1, pos=5)}
Test failed: <failed>
F
======================================================================
FAIL: Checking representation of a nested Table
----------------------------------------------------------------------
Traceback (most recent call last):
File "tables/tests/common.py", line 247, in newmethod
return oldmethod(self, *args, **kwargs)
File "pytables-2.0.3/tables/tests/test_nestedtypes.py", line 724, in
test00a_repr
""")
AssertionError
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