Hi all,
I seem to have lost a long-running simulation... it was writing out to an
hdf5 archive, and when I try to open the archive after the simulation is
over I get the following and several nodes are missing from
Africa.S.db.group0:
In [2]: Africa.S.db._group
HDF5-DIAG: Error detected in HDF5 (1.8.0) thread 0:
#000: H5Gdeprec.c line 777 in H5Giterate(): group iteration failed
major: Symbol table
minor: Iteration failed
#001: H5G.c line 1657 in H5G_iterate(): error iterating over links
major: Symbol table
minor: Iteration failed
#002: H5Gobj.c line 681 in H5G_obj_iterate(): can't iterate over symbol
table
major: Symbol table
minor: Iteration failed
#003: H5Gstab.c line 522 in H5G_stab_iterate(): iteration operator failed
major: Symbol table
minor: Can't move to next iterator location
#004: H5B.c line 1218 in H5B_iterate(): iterator function failed
major: B-Tree node
minor: Unable to list node
#005: H5Gnode.c line 1425 in H5G_node_iterate(): unable to load symbol
table node
major: Symbol table
minor: Unable to load metadata into cache
#006: H5AC.c line 1970 in H5AC_protect(): H5C_protect() failed.
major: Object cache
minor: Unable to protect metadata
#007: H5C.c line 5928 in H5C_protect(): can't load entry
major: Object cache
minor: Unable to load metadata into cache
#008: H5C.c line 10567 in H5C_load_entry(): unable to load entry
major: Object cache
minor: Unable to load metadata into cache
#009: H5Gnode.c line 384 in H5G_node_load(): unable to read symbol table
node
major: Symbol table
minor: Read failed
#010: H5F.c line 2974 in H5F_block_read(): file read failed
major: Low-level I/O
minor: Read failed
#011: H5FD.c line 2046 in H5FD_read(): driver read request failed
major: Virtual File Layer
minor: Read failed
#012: H5FDsec2.c line 725 in H5FD_sec2_read(): addr overflow
major: Invalid arguments to routine
minor: Address overflowed
Out[2]:
/chain0 (Group) 'Chain #0'
children := ['__state__' (VLArray), 'group0' (Group)]
Is there any way I can fix this?
Thanks,
Anand
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