Hi,
Per the installation page, I'm reporting test failures from
tables.test() -- transcript below. PyTables was installed via `port
install py26-tables`.
Please let me know if there is further information that would be useful.
Regards,
Josh
$ python
iPython 2.6.6 (r266:84292, Dec 26 2010, 15:49:00)
[GCC 4.2.1 (Apple Inc. build 5664)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import tables
>>> tables.test()
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
PyTables version: 2.2.1
HDF5 version: 1.8.5-patch1
NumPy version: 1.5.1
Numexpr version: 1.4.1 (not using Intel's VML/MKL)
Zlib version: 1.2.5 (in Python interpreter)
LZO version: 2.03 (Apr 30 2008)
BZIP2 version: 1.0.6 (6-Sept-2010)
Blosc version: 1.1.2 (2010-11-04)
Cython version: 0.14
Python version: 2.6.6 (r266:84292, Dec 26 2010, 15:49:00)
[GCC 4.2.1 (Apple Inc. build 5664)]
Platform: darwin-i386
Byte-ordering: little
Detected cores: 2
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
Performing only a light (yet comprehensive) subset of the test suite.
If you want a more complete test, try passing the --heavy flag to this script
(or set the 'heavy' parameter in case you are using tables.test() call).
The whole suite will take more than 2 minutes to complete on a relatively
modern CPU and around 150 MB of main memory.
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................HDF5-DIAG:
Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5T.c line 1721 in H5Tclose(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5T.c line 1721 in H5Tclose(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5D.c line 377 in H5Dclose(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5T.c line 1721 in H5Tclose(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5T.c line 1721 in H5Tclose(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5D.c line 377 in H5Dclose(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5T.c line 1721 in H5Tclose(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5T.c line 1721 in H5Tclose(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5D.c line 377 in H5Dclose(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5T.c line 1721 in H5Tclose(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5T.c line 1721 in H5Tclose(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5D.c line 377 in H5Dclose(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5T.c line 1721 in H5Tclose(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5T.c line 1721 in H5Tclose(): not a datatype
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5D.c line 377 in H5Dclose(): not a dataset
major: Invalid arguments to routine
minor: Inappropriate type
HDF5-DIAG: Error detected in HDF5 (1.8.5-patch1) thread 0:
#000: H5G.c line 711 in H5Gclose(): not a group
major: Invalid arguments to routine
minor: Inappropriate type
E....
======================================================================
ERROR: None (tables.netcdf3.tests.test_netcdf3.NetCDFFileTestCase2)
----------------------------------------------------------------------
Traceback (most recent call last):
File
"/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/tables/tests/common.py",
line 248, in newmethod
return oldmethod(self, *args, **kwargs)
File
"/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/tables/netcdf3/tests/test_netcdf3.py",
line 165, in test_h5tonc
f.close()
File
"/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/tables/netcdf3/__init__.py",
line 301, in close
self._NetCDF_h5file.close()
File
"/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/tables/file.py",
line 2140, in close
self.root._f_close()
File
"/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/tables/group.py",
line 982, in _f_close
self._g_close()
File
"/opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib/python2.6/site-packages/tables/group.py",
line 949, in _g_close
self._g_closeGroup()
File "hdf5Extension.pyx", line 699, in
tables.hdf5Extension.Group._g_closeGroup (tables/hdf5Extension.c:6028)
HDF5ExtError: Problems closing the Group /
----------------------------------------------------------------------
Ran 2981 tests in 69.126s
FAILED (errors=1)
>>> tables.print_versions()
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
PyTables version: 2.2.1
HDF5 version: 1.8.5-patch1
NumPy version: 1.5.1
Numexpr version: 1.4.1 (not using Intel's VML/MKL)
Zlib version: 1.2.5 (in Python interpreter)
LZO version: 2.03 (Apr 30 2008)
BZIP2 version: 1.0.6 (6-Sept-2010)
Blosc version: 1.1.2 (2010-11-04)
Cython version: 0.14
Python version: 2.6.6 (r266:84292, Dec 26 2010, 15:49:00)
[GCC 4.2.1 (Apple Inc. build 5664)]
Platform: darwin-i386
Byte-ordering: little
Detected cores: 2
-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
>>>
------------------------------------------------------------------------------
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