Try leaving the pytables source dir and then running then running IPython.
On Mon, Dec 10, 2012 at 9:20 AM, Jennifer Flegg <jennifer.fl...@wwarn.org>wrote:
> Hi,
> I'm trying to install pytables and its proving difficult (using MAC OS
> 10.6.4).
> I have installed in "/usr/local/hdf5" and set the environment variable
> $HDF5_DIR to /usr/local/hdf5. When I run setup, I get a warning about
> not being able to find the HDF5 runtime.
>
> ndmmac149:tables-2.4.0 jflegg$ sudo python setup.py install
> --hdf5="/usr/local/hdf5"
> * Found numpy 1.6.1 package installed.
> * Found numexpr 2.0.1 package installed.
> * Found Cython 0.17.2 package installed.
> * Found HDF5 headers at ``/usr/local/hdf5/include``,
> library at ``/usr/local/hdf5/lib``.
> .. WARNING:: Could not find the HDF5 runtime.
> The HDF5 shared library was *not* found in the default library
> paths. In case of runtime problems, please remember to install it.
> ld: library not found for -llzo2
> collect2: ld returned 1 exit status
> ld: library not found for -llzo2
> collect2: ld returned 1 exit status
> * Could not find LZO 2 headers and library; disabling support for it.
> ld: library not found for -llzo
> collect2: ld returned 1 exit status
> ld: library not found for -llzo
> collect2: ld returned 1 exit status
> * Could not find LZO 1 headers and library; disabling support for it.
> * Found bzip2 headers at ``/usr/include``, library at ``/usr/lib``.
> running install
> running build
> running build_py
> creating build
> creating build/lib.macosx-10.5-i386-2.7
> creating build/lib.macosx-10.5-i386-2.7/tables
> copying tables/__init__.py -> build/lib.macosx-10.5-i386-2.7/tables
> copying tables/array.py -> build/lib.macosx-10.5-i386-2.7/tables
>
> When I import pytables in python, I get the following error message
>
> In [1]: import tables
> ---------------------------------------------------------
> ImportError Traceback (most recent call last)
> /Users/jflegg/<ipython-input-1-389ecae14f10> in <module>()
> ----> 1 import tables
>
> /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-
> packages/tables/__init__.py in <module>()
> 28
> 29 # Necessary imports to get versions stored on the Pyrex extension
>
> ---> 30 from tables.utilsExtension import getPyTablesVersion,
> getHDF5Version
> 31
> 32
>
> ImportError: dlopen(/Library/Frameworks/Python.framework/Versions/7.3
> /lib/python2.7/site-packages/tables/utilsExtension.so, 2):
> Symbol not found: _H5E_CALLBACK_g Referenced from:
> /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-
> packages/tables/utilsExtension.so
> Expected in: flat namespace
> in /Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/site-
> packages/tables/utilsExtension.so
>
>
> Any help would be greatly appreciated.
> Jennifer
>
>
>
>
>
> ------------------------------------------------------------------------------
> LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial
> Remotely access PCs and mobile devices and provide instant support
> Improve your efficiency, and focus on delivering more value-add services
> Discover what IT Professionals Know. Rescue delivers
> http://p.sf.net/sfu/logmein_12329d2d
> _______________________________________________
> Pytables-users mailing list
> Pytables-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/pytables-users
>
------------------------------------------------------------------------------
LogMeIn Rescue: Anywhere, Anytime Remote support for IT. Free Trial
Remotely access PCs and mobile devices and provide instant support
Improve your efficiency, and focus on delivering more value-add services
Discover what IT Professionals Know. Rescue delivers
http://p.sf.net/sfu/logmein_12329d2d
_______________________________________________
Pytables-users mailing list
Pytables-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/pytables-users
