Eric Ongerth added the comment:

I'm getting the same PermissionError 13:

Error in atexit._run_exitfuncs:
PermissionError: [Errno 13] Permission denied

My case is: I'm running Python 3.4.0 as a non-root user in a docker.io 
container built on ubuntu 14.04.  This user was created during the creation 
(Dockerfile) of the container.  The user has a home directory and that 
directory appears to have the usual/proper permissions.  When I exit the 
python3 REPL I get this error even if all I did was start python3 from the 
command line and then immediately exit.

So maybe the cause is other, or more subtle, than just a user with no home dir 
or home dir with unusual perms?

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nosy: +Eric.Ongerth

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<http://bugs.python.org/issue19891>
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