Vojtěch Pachol added the comment:

Actually it is a remote fs mounted via samba. OS is Linux.

Tracebacks with Python versions I have:

$ python2.7
Python 2.7.11 (default, Jan 11 2016, 21:04:40) 
[GCC 5.3.1 20160101] on linux2
Type "help", "copyright", "credits" or "license" for more information.
>>> import shutil
>>> shutil.copy2("src", "dst")
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/usr/lib/python2.7/shutil.py", line 131, in copy2
    copystat(src, dst)
  File "/usr/lib/python2.7/shutil.py", line 100, in copystat
    os.chmod(dst, mode)
OSError: [Errno 95] Operation not supported: 'dst'
>>> 
$ python3.4
Python 3.4.4 (default, Jan  5 2016, 15:35:18) 
[GCC 5.3.1 20160101] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import shutil
>>> shutil.copy2("src", "dst")
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/usr/lib/python3.4/shutil.py", line 246, in copy2
    copystat(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/lib/python3.4/shutil.py", line 191, in copystat
    lookup("chmod")(dst, mode, follow_symlinks=follow)
OSError: [Errno 95] Operation not supported: 'dst'
>>> 
$ python3.5
Python 3.5.1+ (default, Jan 13 2016, 15:09:18) 
[GCC 5.3.1 20160101] on linux
Type "help", "copyright", "credits" or "license" for more information.
>>> import shutil
>>> shutil.copy2("src", "dst")
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
  File "/usr/lib/python3.5/shutil.py", line 252, in copy2
    copystat(src, dst, follow_symlinks=follow_symlinks)
  File "/usr/lib/python3.5/shutil.py", line 197, in copystat
    lookup("chmod")(dst, mode, follow_symlinks=follow)
OSError: [Errno 95] Operation not supported: 'dst'
>>>

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<http://bugs.python.org/issue26468>
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