Steve Dower added the comment:

Are you making a debug build? It might be looking for _ctypes_d.pyd in that 
case. You'll need a release build for the embeddable distro, as well as 
including the pyds from the zip in sys.path - they need to be standalone files.

The embeddable release is meant only for redistribution, so you should build 
and test against a full install (including debug binaries if you want) and do 
integration testing with the embeddable package and a release build. (So Zach, 
yes, it's deliberate.)

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<http://bugs.python.org/issue26598>
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