Serhiy Storchaka added the comment:

If you needs non-default permission for particular file, you can use one of 
available ways mentioned above.

I think this issue can be closed. The original issues are resolved:

1. os.open() (corresponding to syscall open()) allows this.
2. There are other ways to create Python file with specific permissions (pass 
fd or use opener).

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Python tracker <rep...@bugs.python.org>
<http://bugs.python.org/issue29214>
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