Forest Gregg added the comment:

I have been trying to make a small reproducible example, but haven't been able 
to isolate it. 

Running this script [1] csv_example on mac os x under either py27 or py3 does 
seem *often* cause this problem [2], [3]:

[1] 
https://github.com/dedupeio/dedupe-examples/blob/master/csv_example/csv_example.py
[2] https://github.com/dedupeio/dedupe/issues/571
[3] https://github.com/dedupeio/dedupe-examples/issues/54

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<http://bugs.python.org/issue30388>
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