Erik Bray <erik.m.b...@gmail.com> added the comment:

I added a new PR modifying makesetup and adding a new variable to 
Makefile.pre.in, PY_BUILTIN_MODULE_CFLAGS, explicitly for building built-in 
modules.

I think this, or some version of it, is a cleaner solution than my previous 
brute-force approach.

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<https://bugs.python.org/issue34212>
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