Hi:
In a pdb file made of lines "ATOM .." (see attachment as I was unable
to obtain plain text with gmail) I would like to reposition the second
"W" from column 19 to 17 ( (Python numbering; in pdb numbering it
would be 20 18). I started with bold slices, then I was unable to
complete the script. Much obliged for help.
francesco pietra
# Sample line
# Slice indexes cut to the left of the corrresponding item index
# 1 2 3 4 5 6
# 012345678901234567890123456789012345678901234567890123456789012345 ...
# ATOM 1 W W 1 0.690 35.960 33.300 1.00 0.00
data = open('out.2.5.2.5.2.0.pdb', 'r')
outp = open('rect.out.2.5.2.5.2.0.pdb', 'w')
for L in data:
if L[19] == 'W':
L = ????
outp.write(L)
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