On Thu, Jan 28, 2010 at 07:07:04AM -0800, evilweasel wrote:
> Hi folks,
>
> I am a newbie to python, and I would be grateful if someone could
> point out the mistake in my program. Basically, I have a huge text
> file similar to the format below:
>
> AAAAAGACTCGAGTGCGCGGA 0
> AAAAAGATAAGCTAATTAAGCTACTGG 0
> AAAAAGATAAGCTAATTAAGCTACTGGGTT 1
> AAAAAGGGGGCTCACAGGGGAGGGGTAT 1
> AAAAAGGTCGCCTGACGGCTGC 0
I know this is a python list but if you really want to get the job
done quickly this is one method without writing python code:
$ cat /tmp/y
AAAAAGACTCGAGTGCGCGGA 0
AAAAAGATAAGCTAATTAAGCTACTGG 0
AAAAAGATAAGCTAATTAAGCTACTGGGTT 1
AAAAAGGGGGCTCACAGGGGAGGGGTAT 1
AAAAAGGTCGCCTGACGGCTGC 0
$ grep -v 0 /tmp/y > tmp/z
$ cat /tmp/z
AAAAAGATAAGCTAATTAAGCTACTGGGTT 1
AAAAAGGGGGCTCACAGGGGAGGGGTAT 1
Regards
Johann
--
Johann Spies Telefoon: 021-808 4599
Informasietegnologie, Universiteit van Stellenbosch
"My son, if sinners entice thee, consent thou not."
Proverbs 1:10
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