On 11 sep, 20:15, _wolf <wolfgang.l...@gmail.com> wrote: > does anyone have a suggestion for a ready-to-go, fast kdtree > implementation for python 3.1 and up, for nearest-neighbor searches? i > used to use the one from numpy/scipy, but find it a pain to install > for python 3. also, i'm trying to wrap the code > fromhttp://code.google.com/p/kdtree/ > using cython, but i'm still getting errors. > > i wish stuff like kdtree, levenshtein edit distance and similar things > were available in the standard library.
Do you know about the kdtree implementation in biopython? I don't know if it is already available for Python 3, but for me it worked fine in Python 2.X. Marco -- http://mail.python.org/mailman/listinfo/python-list
