I have a file compressed with bz2 and a function that expects a file handle. When I decompress the bz2 file I get a string (binary) not a file handle.
Here is what I have that does not work. There is no error (thats a seperate issue) CelFile.read just fails to read the data(string). from Bio.Affy import CelFile from bz2 import decompress, with open('Tests/Affy/affy_v3_ex.CEL.bz2', 'rb') as handle: cel_data = decompress(handle.read()) c = CelFile.read(cel_data) Thanks Vincent Davis
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