Your message dated Tue, 1 Dec 2009 17:27:37 -0600
with message-id <[email protected]>
and subject line Old bug can be closed
has caused the Debian Bug report #481918,
regarding crash: free(inv. pointer) when interacting with rpy & ipython (?)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact [email protected]
immediately.)
--
481918: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=481918
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Package: python2.5
Version: 2.5.2-3
Severity: important
k...@evo:~/tmp/trashme/rpy-ipython-bug$ cat ipythonrc-rpy
include ipythonrc
import_all rpy
k...@evo:~/tmp/trashme/rpy-ipython-bug$ ipython -p rpy
*** glibc detected *** /usr/bin/python: free(): invalid pointer: 0xb6ce00e0 ***
======= Backtrace: =========
/lib/i686/cmov/libc.so.6[0xb7dbd8f5]
/lib/i686/cmov/libc.so.6(cfree+0x90)[0xb7dc1360]
/usr/lib/python2.5/lib-dynload/readline.so[0xb79caff9]
/usr/bin/python(PyEval_EvalFrameEx+0x5d13)[0x80c8b13]
/usr/bin/python(PyEval_EvalCodeEx+0x6e7)[0x80ca257]
/usr/bin/python[0x8111350]
/usr/bin/python(PyObject_Call+0x27)[0x805c9f7]
/usr/bin/python[0x8062a41]
/usr/bin/python(PyObject_Call+0x27)[0x805c9f7]
/usr/bin/python(PyEval_CallObjectWithKeywords+0x6c)[0x80c1efc]
/usr/bin/python(PyInstance_New+0x6e)[0x806625e]
/usr/bin/python(PyObject_Call+0x27)[0x805c9f7]
/usr/bin/python(PyEval_EvalFrameEx+0x3d07)[0x80c6b07]
/usr/bin/python(PyEval_EvalFrameEx+0x5945)[0x80c8745]
/usr/bin/python(PyEval_EvalFrameEx+0x5945)[0x80c8745]
/usr/bin/python(PyEval_EvalCodeEx+0x6e7)[0x80ca257]
/usr/bin/python(PyEval_EvalFrameEx+0x565e)[0x80c845e]
/usr/bin/python(PyEval_EvalCodeEx+0x6e7)[0x80ca257]
/usr/bin/python[0x81112db]
/usr/bin/python(PyObject_Call+0x27)[0x805c9f7]
/usr/bin/python[0x8062a41]
/usr/bin/python(PyObject_Call+0x27)[0x805c9f7]
/usr/bin/python(PyEval_CallObjectWithKeywords+0x6c)[0x80c1efc]
/usr/bin/python(PyInstance_New+0x6e)[0x806625e]
/usr/bin/python(PyObject_Call+0x27)[0x805c9f7]
/usr/bin/python(PyEval_EvalFrameEx+0x3d07)[0x80c6b07]
/usr/bin/python(PyEval_EvalCodeEx+0x6e7)[0x80ca257]
/usr/bin/python(PyEval_EvalFrameEx+0x565e)[0x80c845e]
/usr/bin/python(PyEval_EvalCodeEx+0x6e7)[0x80ca257]
/usr/bin/python(PyEval_EvalCode+0x57)[0x80ca3a7]
/usr/bin/python(PyRun_FileExFlags+0xf8)[0x80e9138]
/usr/bin/python(PyRun_SimpleFileExFlags+0x199)[0x80e93d9]
/usr/bin/python(Py_Main+0xa35)[0x8059205]
/usr/bin/python(main+0x22)[0x80586c2]
/lib/i686/cmov/libc.so.6(__libc_start_main+0xe0)[0xb7d68450]
/usr/bin/python[0x8058631]
======= Memory map: ========
08048000-0813e000 r-xp 00000000 03:03 3363142 /usr/bin/python2.5
0813e000-08163000 rw-p 000f5000 03:03 3363142 /usr/bin/python2.5
08163000-09352000 rw-p 08163000 00:00 0 [heap]
b5e00000-b5e21000 rw-p b5e00000 00:00 0
b5e21000-b5f00000 ---p b5e21000 00:00 0
b5fef000-b5ff0000 ---p b5fef000 00:00 0
b5ff0000-b67f0000 rw-p b5ff0000 00:00 0
b67f0000-b6853000 r-xp 00000000 03:03 3512205
/usr/lib/R/library/stats/libs/stats.so
b6853000-b6855000 rw-p 00063000 03:03 3512205
/usr/lib/R/library/stats/libs/stats.so
b6855000-b68c4000 rw-p b6855000 00:00 0
b68c4000-b68e3000 r-xp 00000000 03:03 3530094
/usr/lib/R/library/grDevices/libs/grDevices.so
b68e3000-b68e4000 rw-p 0001e000 03:03 3530094
/usr/lib/R/library/grDevices/libs/grDevices.so
b68e4000-b6943000 rw-p b68e4000 00:00 0
b6943000-b694c000 r-xp 00000000 03:03 2917125
/lib/i686/cmov/libnss_files-2.7.so
b694c000-b694e000 rw-p 00008000 03:03 2917125
/lib/i686/cmov/libnss_files-2.7.so
b694e000-b6956000 r-xp 00000000 03:03 2917401
/lib/i686/cmov/libnss_nis-2.7.so
b6956000-b6958000 rw-p 00007000 03:03 2917401
/lib/i686/cmov/libnss_nis-2.7.so
b6958000-b696c000 r-xp 00000000 03:03 2917122 /lib/i686/cmov/libnsl-2.7.so
b696c000-b696e000 rw-p 00013000 03:03 2917122 /lib/i686/cmov/libnsl-2.7.so
b696e000-b69b4000 rw-p b696e000 00:00 0
b69b4000-b69da000 r-xp 00000000 03:03 3366117 /usr/lib/libpcre.so.3.12.1
b69da000-b69db000 rw-p 00025000 03:03 3366117 /usr/lib/libpcre.so.3.12.1
b69ee000-b69f4000 r-xp 00000000 03:03 3508415
/usr/lib/R/library/methods/libs/methods.so
b69f4000-b69f5000 rw-p 00005000 03:03 3508415
/usr/lib/R/library/methods/libs/methods.so
b69f5000-b6c40000 r-xp 00000000 03:03 3531589 /usr/lib/R/lib/libR.so
b6c40000-b6c4d000 rw-p 0024b000 03:03 3531589 /usr/lib/R/lib/libR.so
b6c4d000-b6ce2000 rw-p b6c4d000 00:00 0
b6ce2000-b6ceb000 r-xp 00000000 03:03 3410608
/usr/lib/python2.5/site-packages/_rpy2070.so
b6ceb000-b6cec000 rw-p 00008000 03:03 3410608
/usr/lib/python2.5/site-packages/_rpy2070.so
b6cec000-b6cf4000 rw-p b6cec000 00:00 0
b6cf4000-b6d26000 r-xp 00000000 03:03 3512020
/usr/lib/python2.5/site-packages/numpy/random/mtrand.so
b6d26000-b6d2a000 rw-p 00032000 03:03 3512020
/usr/lib/python2.5/site-packages/numpy/random/mtrand.so
b6d2a000-b6d36000 r-xp 00000000 03:03 3227933 /lib/libgcc_s.so.1
b6d36000-b6d37000 rw-p 0000b000 03:03 3227933 /lib/libgcc_s.so.1
b6d37000-b6ddc000 r-xp 00000000 03:03 3362037 /usr/lib/libgfortran.so.3.0.0
b6ddc000-b6dde000 rw-p 000a4000 03:03 3362037 /usr/lib/libgfortran.so.3.0.0
b6dde000-b6e9d000 r-xp 00000000 03:03 3368322 /usr/lib/libblas.so.3gf.0
b6e9d000-b6e9e0Аварийный останов
----
Reproduces on both ipython2.4 and ipython2.5.
Also it is initially not seen whether this is pure python or relates to rpy.
I'd report it to ipython and rpy as well, but since I'm a Debian newbie, I
don't know how to cross-report bugs.
Thanks beforehand.
-- System Information:
Debian Release: lenny/sid
APT prefers testing
APT policy: (500, 'testing')
Architecture: i386 (i686)
Kernel: Linux 2.6.23.9-evo (PREEMPT)
Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/bash
Versions of packages python2.5 depends on:
ii libbz2-1.0 1.0.5-0.1 high-quality block-sorting file co
ii libc6 2.7-10 GNU C Library: Shared libraries
ii libdb4.5 4.5.20-11 Berkeley v4.5 Database Libraries [
ii libncursesw5 5.6+20080308-1 Shared libraries for terminal hand
ii libreadline5 5.2-3 GNU readline and history libraries
ii libsqlite3-0 3.5.8-4 SQLite 3 shared library
ii libssl0.9.8 0.9.8g-10 SSL shared libraries
ii mime-support 3.40-1.1 MIME files 'mime.types' & 'mailcap
ii python2.5-minimal 2.5.2-3 A minimal subset of the Python lan
python2.5 recommends no packages.
-- no debconf information
--- End Message ---
--- Begin Message ---
Sorry for not immediately noticing when this was assigned to my rpy packages
on Nov 19 -- but this is now a non-issue at works as it should:
e...@ron:/tmp$ cat ipythonrc-rpy
include ipythonrc
import_all rpy
e...@ron:/tmp$
e...@ron:/tmp$ ipython -p rpy
**********************************************************************
Welcome to IPython. I will try to create a personal configuration directory
where you can customize many aspects of IPython's functionality in:
/home/edd/.ipython
Initializing from configuration:
/usr/lib/pymodules/python2.5/IPython/UserConfig
Successful installation!
Please read the sections 'Initial Configuration' and 'Quick Tips' in the
IPython manual (there are both HTML and PDF versions supplied with the
distribution) to make sure that your system environment is properly
configured
to take advantage of IPython's features.
Important note: the configuration system has changed! The old system is
still in place, but its setting may be partly overridden by the settings in
"~/.ipython/ipy_user_conf.py" config file. Please take a look at the file
if some of the new settings bother you.
Please press <RETURN> to start IPython.
**********************************************************************
Python 2.5.4 (r254:67916, Sep 26 2009, 08:19:36)
Type "copyright", "credits" or "license" for more information.
IPython 0.10 -- An enhanced Interactive Python.
? -> Introduction and overview of IPython's features.
%quickref -> Quick reference.
help -> Python's own help system.
object? -> Details about 'object'. ?object also works, ?? prints more.
IPython profile: rpy
In [1]:
So I am closing this.
Dirk
--
Three out of two people have difficulties with fractions.
--- End Message ---
_______________________________________________
Python-modules-team mailing list
[email protected]
http://lists.alioth.debian.org/mailman/listinfo/python-modules-team
